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Bulletin of State University of Education. Series: Physics and Mathematics

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The use of artificial solid-state pores for measurement of catalytic activity of individual molecules of horseradish peroxidase

https://doi.org/10.18384/2949-5067-2025-1-40-51

Abstract

Aim. Determination of the catalytic activity of a single molecule of horseradish peroxidase (HRP) in the oxidation reaction of the substrate 2,2ʹ-azino-bis-[3-ethylbenzthiazoline-6- sulfonate] (ABTS) with hydrogen peroxide.

Methodology. To determine (monitor) the catalytic activity of HRP, pore technology has been used; it has allowed us to analyze the activity of a single HRP molecule without introducing additional components into the system to enhance the signal. For this purpose, a solid-state pore of about 5 nm in size, formed by electron-beam drilling in a silicon nitride plate of ~40 nm thickness, has been used. A HRP molecule has been embedded in this pore, after which the catalytic activity of the molecule embedded in the pore in the presence of ABTS and H2O2 has been analyzed by measuring the ion current through the pore with the HRP molecule embedded in it.

Results. A pore detector has been proposed to study the catalytic activity of HRP in the reaction of ABTS oxidation. It has been found that this detector made it possible to monitor the activity of this enzyme by registering of ion current through the pore.

Research implications. It has been shown that the manufactured pore can be used to monitor HRP activity. The results obtained are important for the development of work in the field of enzyme research at the level of single molecules.

About the Authors

Yu. D. Ivanov
Institute of Biomedical Chemistry; Joint Institute for High Temperatures of the Russian Academy of Sciences
Russian Federation

Yuri D. Ivanov – Dr. Sci. (Biology), Prof., Laboratory Head, Laboratory of Nanobiotechnology; Leading Researcher, Laboratory No. 6.2. – Shock wave impacts

Moscow



A. N. Ableev
Institute of Biomedical Chemistry
Russian Federation

Alexander N. Ableev  – Leading Engineer, Laboratory of Nanobiotechnology

Moscow



V. V. Shumyantseva
Institute of Biomedical Chemistry
Russian Federation

Victoria V. Shumyantseva – Dr. Sci. (Biology), Prof., Laboratory Head, Laboratory of Bioelectrochemistry

Moscow



I. D. Shumov
Institute of Biomedical Chemistry
Russian Federation

Ivan D. Shumov – Cand. Sci. (Biology), Researcher, Laboratory of Nanobiotechnology

Moscow



V. S. Ziborov
Institute of Biomedical Chemistry; Joint Institute for High Temperatures of the Russian Academy of Sciences
Russian Federation

Vadim S. Ziborov – Cand. Sci. (Phys.-Math.), Senior Researcher, Laboratory No. 6.2. – shock wave impacts; Leading Specialist, Laboratory of Nanobiotechnology

Moscow



E. D. Nevedrova
Institute of Biomedical Chemistry
Russian Federation

Ekaterina D. Nevedrova  – Research Assistant, Laboratory of Nanobiotechnology

Moscow



A. V. Vinogradova
Institute of Biomedical Chemistry
Russian Federation

Angelina V. Vinogradova – Research Assistant, Laboratory of Nanobiotechnology

Moscow



I. A. Ivanova
Institute of Biomedical Chemistry
Russian Federation

Irina A. Ivanova – Research Assistant, Laboratory for Research of Single Biomacromolecules

Moscow



N. V. Vaulin
Alferov Federal State Budgetary Institution of Higher Education and Science Saint Petersburg National Research Academic University of the Russian Academy of Sciences
Russian Federation

Nikita V. Vaulin – Laboratory Assistant, Laboratory for Renewable Energy Sources

Saint-Petersburg



D. V. Lebedev
Alferov Federal State Budgetary Institution of Higher Education and Science Saint Petersburg National Research Academic University of the Russian Academy of Sciences
Russian Federation

Denis V. Lebedev – Cand. Sci. (Phys.-Math.), Senior Researcher, Laboratory for Renewable Energy Sources 

Saint-Petersburg



A. S. Bukatin
Alferov Federal State Budgetary Institution of Higher Education and Science Saint Petersburg National Research Academic University of the Russian Academy of Sciences
Russian Federation

Anton S. Bukatin – Cand. Sci. (Phys.-Math.), Assoc. Prof., Senior Researcher, Laboratory for Renewable Energy Sources

Saint-Petersburg



I. S. Mukhin
Alferov Federal State Budgetary Institution of Higher Education and Science Saint Petersburg National Research Academic University of the Russian Academy of Sciences
Russian Federation

Ivan S. Mukhin – Dr. Sci. (Phys.-Math.), Prof., Laboratory Head, Laboratory for Renewable Energy Sources

Saint-Petersburg



I. N. Saraeva
Р. N. Lebedev Physical Institute of the Russian Academy of Sciences
Russian Federation

Irina N. Saraeva – Cand. Sci. (Phys.-Math.), Researcher, Laboratory for Laser Nanophysics and Biomedicine, Department of Quantum Radiophysics named after N. G. Basov

Moscow



P. Y. Apel
Joint Institute for Nuclear Research
Russian Federation

Pavel Yu. Apel – Dr. Sci. (Chemistry), Head of the Center for Applied Physics, Flerov Laboratory of Nuclear Reactions

Dubna, Moscow Region



E. S. Yushkov
National Research Nuclear University MEPhI
Russian Federation

Evgeniy S. Yushkov – Cand. Sci. (Engineering), Assoc. Prof., Department No. 71 “Economics and Management in Industry”

Moscow



A. I. Archakov
Institute of Biomedical Chemistry
Russian Federation

Alexander I. Archakov – Dr. Sci. (Biology), Prof., Scientific Leader

Moscow



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